ykzQ [2019-08-26 09:01:58]

similar to potassium binding protein

locus: BSU_13789

pI: 9.00

mw: 8.00 kDa

protein length: 75 aa

gene length: 228 bp

function: unknown

product: unknown

essential: -

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 1,445,314 → 1,445,541

The protein

[SW|Domains]

• contains a N-acetylglucosamine-polymer-binding [SW|LysM domain] [Pubmed|18430080]

Structure

• [PDB|5FIM] (from E. coli, 36% identity) [pubmed|27112601]

[SW|Localization]

• outer spore coat

Expression and Regulation

Operons

• genes: [gene|FC4C5377EF1D794DCB19D0A8AFE958B84BD9C8BE|ykvP]-[gene|E8311435A86835799E9093DD9CF3733CFFF18DCC|ykzQ]-[gene|BC8CBFF0C2F3C2BEE3275E2CB65D41F2AFC0A1CD|ykvQ]-[gene|4FDAD5E5660EDB346A37C1F41BD8B7B66561E529|ykzR]
  description: [Pubmed|11011148,22383849]

  sigma factors

  • [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, [Pubmed|11011148,15699190], in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]

  regulation

  • expressed late during sporulation in the mother cell ([protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]) [Pubmed|11011148,15699190]

• genes: [gene|E8311435A86835799E9093DD9CF3733CFFF18DCC|ykzQ]
  description: [pubmed|22383849]

  sigma factors

  • [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, [Pubmed|26577401], in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]

  regulatory mechanism

  • [protein|19228BAD44E6DA3DE908DC390FDF628C18D94E65|GerE]: activation, [Pubmed|26577401], in [regulon|19228BAD44E6DA3DE908DC390FDF628C18D94E65|GerE regulon]

Biological materials

Mutant

• BKE13789 (Δ[gene|E8311435A86835799E9093DD9CF3733CFFF18DCC|ykzQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE13789 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CCCCTTCATTCATATTACTC, downstream forward: _UP4_TAATCTTTGAGGTTTCGGAA
• BKK13789 (Δ[gene|E8311435A86835799E9093DD9CF3733CFFF18DCC|ykzQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK13789 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CCCCTTCATTCATATTACTC, downstream forward: _UP4_TAATCTTTGAGGTTTCGGAA

References

• 18430080,26577401,27766092,27112601